Crystal Structure and Subsequent Ligand Design of a Nonriboside Partial Agonist Bound to the Adenosine A2A Receptor

J Med Chem. 2021 Apr 8;64(7):3827-3842. doi: 10.1021/acs.jmedchem.0c01856. Epub 2021 Mar 25.

Abstract

In this study, we determined the crystal structure of an engineered human adenosine A2A receptor bound to a partial agonist and compared it to structures cocrystallized with either a full agonist or an antagonist/inverse agonist. The interaction between the partial agonist, belonging to a class of dicyanopyridines, and amino acids in the ligand binding pocket inspired us to develop a small library of derivatives and assess their affinity in radioligand binding studies and potency and intrinsic activity in a functional, label-free, intact cell assay. It appeared that some of the derivatives retained the partial agonist profile, whereas other ligands turned into inverse agonists. We rationalized this remarkable behavior with additional computational docking studies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine A2 Receptor Agonists / metabolism*
  • Aminopyridines / chemical synthesis
  • Aminopyridines / metabolism*
  • Animals
  • Binding Sites
  • CHO Cells
  • Cricetulus
  • Crystallography, X-Ray
  • Drug Inverse Agonism
  • Drug Partial Agonism
  • HEK293 Cells
  • Humans
  • Ligands
  • Molecular Docking Simulation
  • Protein Binding
  • Pyrimidines / chemical synthesis
  • Pyrimidines / metabolism*
  • Receptor, Adenosine A2A / metabolism*
  • Small Molecule Libraries / metabolism

Substances

  • Adenosine A2 Receptor Agonists
  • Aminopyridines
  • Ligands
  • Pyrimidines
  • Receptor, Adenosine A2A
  • Small Molecule Libraries